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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015941410.1_cds_XP_016485269.1_76211
CDS Infomation

[gene=LOC107805711] [db_xref=GeneID:107805711] [protein=polygalacturonase-like] [protein_id=XP_016485269.1] [location=join(4173..4508,5449..5580,6311..6478,6696..6716,7330..7537,8239..8320,8459..8567,8804..8920,9485..9712)] [gbkey=CDS]
Sequence

ATGGCCCATCTAAGGAATCTCTTCGTATTATTCACCATTTTTATGCTTATTATATCATTT
TCATCTTGTAGCAGTATTAAATTCCAAAGTGAAGAAATATTAAGAGAAGCTCAAGATCAT
AACATGAATCTTGAAAGGGAATTTGGTTATGATTTTCAAGCTTATCCTTCTAATTATTTC
AACACCATTGATCTTGAAAACAACAACAATTTTGATGATCAAATTAGTAGATTTAATAGA
TTCAAGAATTTGGAGAAAGATGAAGCAGTTGAGGTTACAACAATCAATGTGGATAGCTTT
GGAGCTAAAGGTGATGGAAATACAGATGATACGAATGCATTTCAAAAAGCATGGAAAGTG
GTTTGTTTGTCTTCAGCTGCAGTGAATTTTGTGGTACCTCAAAACAAGAAATATCTTCTC
AAACAGATCAAATTTTCTGGTCCATGCAAATCTTTCATTTCAATGCAGATTTCTGGAACT
CTATTAGCATCTGATAAGACTTCGGATTACAGCAAAGATAGCAGGCACTGGCTTCAATTT
AATAATGTTCGAAACTTGGTTGTTGAAGGAGAAGGAGTTATCAACGGCAATGGGAAAATT
TGGTGGCAAAATTCTTGCAAAATTAATAAAAAATTGCCGTGCAAGCATGCACCCACGGCC
CTAACATTCTACAACTGCAACAACTTGAAAGTGAGGGAACTTAAGATAGAAAATGCACAA
CAAATGCATGTCTCATTTGAGAGATGCTCTGGAGTTGAAGTTACAAAACTGGTTGTGAGT
GCTCCAGAAAATAGCCCTAACACTGATGGTATCCATATAACAAACACCAAAAACATCACA
ATTTCTAGTTGTTCCATTGGCACAGGTGATGATTGCATCTCAATTGAGAGTGGATCCCGA
AATGTTCAAGCCAAAGACATTACTTGTGGACCAGGTCATGGAATAAGTATTGGAAGCTTG
GGAGATGGAAATTCAGAAGCTCATGTGTCTAATATTTTTGTGTATGGAGCTAAGCTTACT
GGAACTACAAATGGACTTAGGATCAAGACTTGGCAGGGAGGATCTGGAAGTGCAAATAAC
ATCAAATTTCAAAATGTGGTGATGAATGGTGTTAAAACCCCCATTATTATAGACCAAAAC
TATTGTGATCAAGATTCTCCATGCAAAGAACAGGATTCAGCAGTTCAAGTGAAAAATGTG
ATTTATCTAAACATCAAAGGCACAAGCGCGACGAATGAAGCTATAAATTTTGATTGCAGC
AAAAACTTTCCATGTCAAGGAATTTTATTGCAGAATGTAAACTTGGTTGGGGAAAATGGT
GAAACTTCAAAAGCTGTTTGCAATCATGTCAATTTTGTCAACATTTCAGCTGTCTCTCCA
AAATGTCCCCAAATGAATTGA

Peptide Sequence

PEP ID

XP_016485269.1
PEP Infomation

PREDICTED: polygalacturonase-like [Nicotiana tabacum]
Sequence

MAHLRNLFVLFTIFMLIISFSSCSSIKFQSEEILREAQDHNMNLEREFGYDFQAYPSNYF
NTIDLENNNNFDDQISRFNRFKNLEKDEAVEVTTINVDSFGAKGDGNTDDTNAFQKAWKV
VCLSSAAVNFVVPQNKKYLLKQIKFSGPCKSFISMQISGTLLASDKTSDYSKDSRHWLQF
NNVRNLVVEGEGVINGNGKIWWQNSCKINKKLPCKHAPTALTFYNCNNLKVRELKIENAQ
QMHVSFERCSGVEVTKLVVSAPENSPNTDGIHITNTKNITISSCSIGTGDDCISIESGSR
NVQAKDITCGPGHGISIGSLGDGNSEAHVSNIFVYGAKLTGTTNGLRIKTWQGGSGSANN
IKFQNVVMNGVKTPIIIDQNYCDQDSPCKEQDSAVQVKNVIYLNIKGTSATNEAINFDCS
KNFPCQGILLQNVNLVGENGETSKAVCNHVNFVNISAVSPKCPQMN

Transcript Sequence

Gene sequence data has not been registered.